Package index • vfbr

Package Help

Provides an overview of key functions and classes

vfbr-package vfbr: Programmatic Access to the virtualflybrain.org website

Queries

Programmatic queries of VFB data

vfb_autocomplete_query(): Replicate the VFB site's autocomplete query

vfb_neo4j_query(): Query VFB's Neo4J graph database

vfb_owl_query(): Generic query against VFB OWL API

vfb_solr_query(): Query VFB via solr indexing system

vfb_synonym_query(): Find canonical ontology term using VFB SOLR to query synonyms

Image Data

download_gmr_stacks(): Download the registered GMR stacks for given ids

gmr_stack_urls() gmr_stack_urls_for_ids(): Return the urls for GMR-Gal4 stacks

vfb_3dbrowser_url(): Make a URL for a set of VFB ids to be displayed in the 3D browser

vfb_stack_url(): Make a URL for a set of VFB ids to be displayed in the stack browser

vfb_download_url_from_vfbid(): Find generic URL to image stack for download from VFB based on VFB ID

NBLAST neuron search

vfb_nblast(): Query vfb opencpu server to obtain pre-computed nblast scores

Identifiers

gmr_vfbid(): Convert GMR identifiers to VFB ids

vfb_fromvfbids() vfb_tovfbids(): Convert between VFB and external identifiers