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Query vfb opencpu server to obtain pre-computed nblast scores

Source: R/vfb_nblast.R
vfb_nblast.Rd

Query vfb opencpu server to obtain pre-computed nblast scores

Usage

vfb_nblast(
  query,
  n = 50,
  target = c("FlyCircuit", "GMR-Gal4"),
  vfb_ids = NA,
  server = getOption("vfbr.server.r"),
  ...
)

Arguments

query

A single flycircuit identifier

n

The number of hits to return

target

The target data set to query

vfb_ids

Whether to expect and return VFB identifiers rather than the ids used in the original dataset. Default value vfb_ids=NA attempts to autodetect and return VFB ids.

server

The base url of the server

...

Additional arguments to be included in the POST

Value

a data.frame in descending score order with columns

  • id Flycircuit Neuron name

  • score NBLAST score

Examples