R/analysis.R
make_roi_from_mean.RdConstruct a mean image, blur and threshold to make an ROI for analysis
make_roi_from_mean(x, blur = 5, thr = "95%", ...)
| x | A hyperstack or path to one or more TIFF files (see
|
|---|---|
| blur | The gaussian sigma to use |
| thr | A thresholding specification (passed to
|
| ... | Additional arguments passed to |
A 2D mask in the form of an imager::cimg object
This is currently targeted at single plane imaging data.
cimg, t_profile,
make_hyperstack