R/analysis.R
make_roi_from_mean.Rd
Construct a mean image, blur and threshold to make an ROI for analysis
make_roi_from_mean(x, blur = 5, thr = "95%", ...)
x | A hyperstack or path to one or more TIFF files (see
|
---|---|
blur | The gaussian sigma to use |
thr | A thresholding specification (passed to
|
... | Additional arguments passed to |
A 2D mask in the form of an imager::cimg object
This is currently targeted at single plane imaging data.
cimg
, t_profile
,
make_hyperstack