make_hyperstack
reads a single TIFF which may have 3-4
dimensions.
make_hyperstack_multifile
reads multiple TIFFs each of
which will have 2-3 dimensions (usually x,y,t) and combines into a single
hyperstack x,y,t,file
make_hyperstack(x, zslices, timepoints, time.axis = 4, ...) make_hyperstack_multifile(x, file.axis = 4, ...)
x | Path to (one or more) TIFFs |
---|---|
zslices | Number of zlices in each TIFF |
timepoints | Number of timepoints in each TIFF |
time.axis | Which axis will end up as the time axis in the output |
... | Additional arguments passed to |
file.axis | Which axis will end up as the file axis in the output when reading multiple files |
a 4D array typically ordered x,y,z,t or x,y,t,file.
Where possible the hyperstack will include the description
attribute from the original scanimage file. This can be used with
scanimageinfo
or parse_description
to access
useful information about the underlying image.