Function reference • scanimage

Package Help
`scanimage-package`	scanimage: A package to read 2 photon image data acquired by ScanImage
Stacks Functions for reading in / reshaping image stacks
`read.any.tiff()`	Convenience function to read any TIFF image with attached information
`read.scanimage()`	Read scanimage tiffs into an R object
`parse_description()`	parse description of ScanImage TIFF file, converting it to key-value list
`scanimageinfo()`	Extract key image information from a scanimage TIFF
`make_hyperstack()` `make_hyperstack_multifile()`	Read one or more TIFFs into 4D hyperstack
Analysis Functions for analysing Ca+2 imaging data
`make_roi_from_mean()`	Construct a mean image, blur and threshold to make an ROI for analysis
`t_profile()`	Construct a temporal profile of voxels within an ROI
`gather_t_profile()`	Make a tidy data frame from time profile output e.g. for use with ggplot

Reference