Package Overview

nat.amira-package

A simple interface beween Amira and the neuronatomy toolbox (nat)

Functions

Main functions for end users

open_amira()

Open a file or R object in Amira

open_stack_viewer()

Open our Amira Stack viewer script to review a set of files

write_neurons_for_amira()

write neurons out in a directory hierarchy suitable for Amira

Support functions

Principally intended for developer use

amira_app_path() amira_version() amira_start_path()

Utility functions to locate Amira application

write_amira_script()

Write a simple Amira script