elmr 0.5.5

  • teach open_fafb to make many URLs at once e.g. for results of tagged_details (#41)

elmr 0.5.4

  • add plot3d.ngraph (shows directed graph in 3d)
  • fix simplify_neuron when spine has 1 branch only (#40)
  • vignette tweaks

elmr 0.5.3

  • teach simplify_neuron to handle the inverse as well (#38)
  • change IVLP -> WED in FAFBNP surfaces as well as FAFB14NP (#35)
  • teach fetchn_fafb to work even if FAFB is given as the reference brain (#39)

elmr 0.5.2

  • teach simplify_neuron to handle arbitrary number of branch points (#37)
  • minor doc fixes

elmr 0.5.1

  • teach distal_to to handle multiple input nodes
  • add simplify_neuron function to make neuron with just one branchpoint
  • fix summarise_contributions for ‘synapses’ (#34)
  • change IVLP -> WED in FAFBNP surfaces (#35)
  • fix stitch_neurons for latest nat 1.9 prerelease (#36)

elmr 0.5

  • switch to FAFB14 as the default EM assembly
  • provide default objects (FAFB, FAFB.surf, FAFBNP.surf) that will always point to current assembly.
  • fix bug in distal_to (#31)
  • doc improvements for distal_to

elmr 0.4.2

  • update to 170303_ELM_landmarks_v14 landmarks (including transforming surfaces)
  • first version of unspike function
  • new vignette - making meshes programmatically
  • insist on nat >= 1.8.8
  • fetchn_fafb/nblast_fafb can take pre-downloaded neuronlist
  • teach unspike to keep connectors/soma (#29)

elmr 0.4.1

  • Add functions to summarise tracer effort

elmr 0.4

  • switch FAFB13-JFRC2013 transform to 170211_new_ELM_landmarks_v7.csv (71 landmarks more evenly spaced on both sides of the brain)
  • update FAFB13 and FAFB13NP surface objects accordingly
  • fix open_fafb after change in stack id handling
  • add landmarks vignette

elmr 0.3

  • make nblast_fafb parallelised by default
  • give open_fafb arguments for selecting neuron/nodes (#24)
  • add FAFB13 brain and neuropil surface objects
  • complete switch to FAFB13 assembly (vignettes etc)
  • fix open_fafb for v13 (#23)

elmr 0.2.1

  • teach nblast_fafb to cope with db length <100 (#22)

elmr 0.2

  • switch to FAFB13 as default template brain
  • much new functionality including transforming between template brains via xform_brain
  • nblast_fafb for searches

elmr 0.1

  • first version